PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001576.1_g320.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 188aa MW: 21753 Da PI: 10.6539

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001576.1_g320.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.8	6e-14	50	95	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEde l+ vk+ G+++W++I ++ + Rt+k+c++rw + Pav_sc0001576.1_g320.1.mk 50 KGPWTAEEDEVLISHVKKCGPRDWSSIRSRGLLPRTGKSCRLRWVN 95 79***********************8775577********87 PP
2	Myb_DNA-binding	40.9	4.7e-13	106	143	3	42
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 ++++eE+ +++ +q+G++ W++Ia +++ gRt++++k+ Pav_sc0001576.1_g320.1.mk 106 KFSPEEERMVIQLQAQFGNK-WAKIATYLP-GRTDNDVKN 143 89****************.*****.*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence
MGLMEPNPNY IAGKKVYSYN MMGRSQQIEQ VCEHQCQYGN SKRPNANVKK GPWTAEEDEV 60 LISHVKKCGP RDWSSIRSRG LLPRTGKSCR LRWVNKLRPN WKTGSKFSPE EERMVIQLQA 120 QFGNKWAKIA TYLPGRTDND VKNLCSTRRK RFQRILQKST SLQSQNNKRK SPLVQHELPE 180 VKVPPDPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	8e-60	MYB family protein