PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001583.1_g420.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 106aa MW: 11545.8 Da PI: 6.4965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001583.1_g420.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.8	1.5e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Pav_sc0001583.1_g420.1.mk 1 MVYEANARVRDPVYGCVGAISSLQQQIDALQTQLAIAQAE 40 69*********************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence
MVYEANARVR DPVYGCVGAI SSLQQQIDAL QTQLAIAQAE VVHMRMGQFS TSSATSNAAT 60 TTTCSPDQKS TAPNHSHHHN HQTTKSFFTM DMVVDQANMG ESLWSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	2e-22	LBD family protein