PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001583.1_g450.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 235aa    MW: 27563.7 Da    PI: 4.6913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001583.1_g450.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.51.1e-182276261
                        NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfF 61
                                pGfrFhPtdeelv +yL++kve+k +++ e ik++diyk++PwdLp+     ++ +y +
  Pav_sc0001583.1_g450.1.mk 22 LPGFRFHPTDEELVEFYLRRKVEKKAISI-ELIKSIDIYKHDPWDLPS----MHTYIYIY 76
                               59***************************.89**************93....23445555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MDSNYTSTKD DHQYIDEDDV QLPGFRFHPT DEELVEFYLR RKVEKKAISI ELIKSIDIYK  60
HDPWDLPSMH TYIYIYVPIN EFLLSLFNFS SLEIWTLCRI FKRNVSYKKY TADWRELSGA  120
KRHPVDTVSS KKCTSDQDDL DQSNNYISFG ASDNTICYEE KKPVVNHTNM NNFNGSNQQL  180
HAVGQLSSNM PATYPYMETF SNFSYQDLEN ELLNENWDEL RSAAVHLAFD PTFLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-22NAC family protein