PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001615.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 365aa    MW: 38788.9 Da    PI: 7.8678
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001615.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-11299344655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Pav_sc0001615.1_g050.1.mk 299 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 344
                                689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    
MYPSTSSSSS QNPMGPGPGP SPSATGLTRY GSAPGSLLTS AVDSVIGTVA DREFSALRSQ  60
PHLGHYFSGD GHGDDSSLTS SESTFKVNSS NGGRDATKPL LRSYGLNEMA NAIGSPTSSS  120
SCSSPSALVR QRSSPAGFLS HLPAPDNNGG FSVTRGAGIY SSQGGTNGGH GHGVTRLKSQ  180
LSFTRQDSLS QISEVSENAM EGVSSNNGHH RAMHSYPTTS FGMESWDNTN SIVFSAPPSK  240
RAKNLDGDLF NCLNALESQF SLPQTSLEMA TVEKLLHIPE DSVPCKIRAK RGCATHPRSI  300
AERERRTRIS GKLKKLQDLV PNMDKQTSYA DMLDLAVQHI KGLQNQVEDL HKDLENCTCG  360
CKPNT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-93bHLH family protein