PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001640.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

YABBY

Protein Properties

Length: 192aa MW: 21235 Da PI: 8.5901

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001640.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	231	2.8e-71	6	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvek 88 +se+vCyv+CnfCntilavsvP +sl ++vtvrCGhC++llsvn+ + q a + d +l+++ll + ++++ + s ++ Pav_sc0001640.1_g110.1.mk 6 MASERVCYVHCNFCNTILAVSVPCNSLQNMVTVRCGHCANLLSVNMGASLQSNALPPQ-DPQLQKHLLSSEDSNKS-CGS-SSS 86 579*****************************************999988887776.55666665554443332.222.233 PP YABBY 89 eesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++++ ++ e+ e ++ +r+ p irPPekrqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Pav_sc0001640.1_g110.1.mk 87 SKCSKFGHPFES---VELHDQTRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSTAAKNWAHFPHIHFGL 164 344444455544...45555556566.9**************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNMVTVRC GHCANLLSVN MGASLQSNAL 60 PPQDPQLQKH LLSSEDSNKS CGSSSSSKCS KFGHPFESVE LHDQTRISPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKAGNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGSK QPKLDQTFAG 180 GDQGTQKSSG FY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-74	YABBY family protein