PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001710.1_g1500.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 334aa    MW: 36744 Da    PI: 7.2038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001710.1_g1500.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000431992371255
                                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Pav_sc0001710.1_g1500.1.mk 199 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 237
                                 6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLGGLSIHED  60
GFGTLSHFQP KGRLENWEED QIFIPQYPRA PVVDFIKQES NSQNSINLCN NPHGDEEFQL  120
APSSRPVWSP VQIMPVSSPR SCVTSLSNNN ILDFSYNKAD NKRNQQADHS SECNSTATGG  180
MCKKARVQPS PSQPPLKVRK EKLGDRITAL HQLVSPFGKT DTASVLLEAI GYIRFLQGQI  240
EALSSPYLGN ASKNMRNQQS VQGERNCVFP EDPGQLLNDN SLKRKGAPNQ NSSSQDKAKD  300
LRSKGLCLVP VSSTQHVGSD NGADYWAPAY GSGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-80bHLH family protein