PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001710.1_g250.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 81aa    MW: 8849.39 Da    PI: 8.4913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001710.1_g250.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26048.42.7e-151501867
                     DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67
                               +apyfpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ 
  Pav_sc0001710.1_g250.1.br  1 MAPYFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGKG 50
                               59*******************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    
MAPYFPASRY SEFQNAHKIF GVSNIQKIMA MAAPDQRQAA AESILTEGKG MQGKMILCVV  60
VLALSEVSMP KFGDLKENSI L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19820.14e-09LBD family protein