PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001710.1_g360.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 280aa MW: 32143.6 Da PI: 4.9739

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001710.1_g360.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.6	2.1e-15	46	130	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 Wt++e+ +L++a ++ + ++++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk++ + t ++ss+++yf++ Pav_sc0001710.1_g360.1.mk 46 WTEHETFVLLDAWGDRFLQRGKKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKERLKFAE-TGGASSKWVYFKK 128 ***********************************762678******************99998.689999***** PP trihelix 85 le 86 ++ Pav_sc0001710.1_g360.1.mk 129 MD 130 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MDDTEDDARY PPNPYGVNHQ QGYVPPAAAP SAPRQSIGGR NSLTDWTEHE TFVLLDAWGD 60 RFLQRGKKSL RSEEWQEVAE KVSEVSKIER TDTQCRNRLD TLKKKYKKER LKFAETGGAS 120 SKWVYFKKMD MLMSSPQQQS GLSCGLDSGE YVFMNPRVYL NRANGLDEMR DSPGNSESAE 180 GADDDSDGLP PKKRRYGRDN DDRCSFRLLA DSIQKFSDIY EKIETSKRQQ MVELEKMRMD 240 FHRDLEMQKR QIMERAQAEI AKIQQGDDEE NDISAENASG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	9e-77	Trihelix family protein