PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001718.1_g270.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 251aa    MW: 27582.7 Da    PI: 7.0807
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001718.1_g270.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.51e-17184237255
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                rk+ +++k+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa++
  Pav_sc0001718.1_g270.1.mk 184 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARY 237
                                778899**********************************************97 PP
2HD-ZIP_I/II83.62.9e-27184238155
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 
                                +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR+ 
  Pav_sc0001718.1_g270.1.mk 184 RKKLRLSKDQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARYN 238
                                69***************************************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MELALSLGDA SKPFLFLDKA PKMGSKDLGF CMGLGGAFSA RSDESRESTH EGGHDQDERR  60
RRRVSSDPPV QLNLLPSAPV PRSHASSQLR FPWLTDNLAV SEPAGSSDGS GRGLDVNRMP  120
GMVAAAEEAE DAAAPLSSPN STVSSFQMDF GVGNGGRSSK RDLELETDRA SSRASDDEDN  180
GSTRKKLRLS KDQSAFLEES FKEHSTLNPK QKLALAKQLN LRPRQVEVWF QNRRARYNTF  240
FFPFPSLDVI H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183189TRKKLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-37HD-ZIP family protein