PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001740.1_g020.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LFY
Protein Properties Length: 410aa    MW: 45501.8 Da    PI: 7.1348
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001740.1_g020.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY627.22.9e-19113951386
                    FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaark.lr...eleelfkayGvryltvakiaelGftvstLvd 80 
                                mdp+afsaslfkwd r ++++p+ r++ ea+v++++++aaaa aa++  r   +le+lf+ayGvry+t+akiaelGftv+tL+d
  Pav_sc0001740.1_g020.1.mk   1 MDPDAFSASLFKWDLRGMVVPPT-RAQLEASVTPQAAAAAAAYAAVRpPRelgGLEDLFQAYGVRYYTAAKIAELGFTVNTLLD 83 
                                9**************99887766.55555555544433333333322233555******************************* PP

                    FLO_LFY  81 mkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaags 163
                                m+d eldd+m+sls+ifr+dllvGeryGikaavraerrrl++++  ++rr  +s d++t aldalsqeglseepvq+eke++g+
  Pav_sc0001740.1_g020.1.mk  84 MRDGELDDMMSSLSQIFRWDLLVGERYGIKAAVRAERRRLDDQD--SRRRP-VSGDTTTnALDALSQEGLSEEPVQQEKEMVGT 164
                                ******************************************88..66664.66665554**********************99 PP

                    FLO_LFY 164 ggeglgeaelvaaeekkseeekkkaskk.kqkrkkkkelkse..........ededeeeeededeegsgedge...erqrehPf 233
                                gg+   ++e+va++ +k+++++++++ + ++ +   +               +ded+++ +d +++g+g +g    er rehPf
  Pav_sc0001740.1_g020.1.mk 165 GGGA--AWEVVASAGEKRKKQRRTKNGQyRNFNGIGR----GhnnndhnegvDDEDDNDMDDMNGHGNGGGGGlpsERVREHPF 242
                                9988..8888877754433333333222122221111....01223444555666666666666666666655677******** PP

                    FLO_LFY 234 ivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee 317
                                ivtepgevargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfr+akkagasyinkPkmrhYvhCYalhcLdee
  Pav_sc0001740.1_g020.1.mk 243 IVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRFAKKAGASYINKPKMRHYVHCYALHCLDEE 326
                                ************************************************************************************ PP

                    FLO_LFY 318 asnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                                asnalrr fkergenvGawr+acykplvaiaa qgwdida+fn+hprLs+WYvPtk+rqLCh+er++a+
  Pav_sc0001740.1_g020.1.mk 327 ASNALRRVFKERGENVGAWRHACYKPLVAIAAGQGWDIDAIFNSHPRLSVWYVPTKIRQLCHTERNNAT 395
                                ******************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MDPDAFSASL FKWDLRGMVV PPTRAQLEAS VTPQAAAAAA AYAAVRPPRE LGGLEDLFQA  60
YGVRYYTAAK IAELGFTVNT LLDMRDGELD DMMSSLSQIF RWDLLVGERY GIKAAVRAER  120
RRLDDQDSRR RPVSGDTTTN ALDALSQEGL SEEPVQQEKE MVGTGGGAAW EVVASAGEKR  180
KKQRRTKNGQ YRNFNGIGRG HNNNDHNEGV DDEDDNDMDD MNGHGNGGGG GLPSERVREH  240
PFIVTEPGEV ARGKKNGLDY LFHLYEQCRD FLIQVQNIAK ERGEKCPTKV TNQVFRFAKK  300
AGASYINKPK MRHYVHCYAL HCLDEEASNA LRRVFKERGE NVGAWRHACY KPLVAIAAGQ  360
GWDIDAIFNS HPRLSVWYVP TKIRQLCHTE RNNATASSSA SGGGGDHLPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-106LFY family protein