PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001781.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 361aa MW: 40390.4 Da PI: 6.5868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001781.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	185	231	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq Pav_sc0001781.1_g110.1.mk 185 DHVLAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYMKHLQ 231 58899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MDMISSAKWV SDLEMEDPTF IHQYEMNSLD YSLDDLNFQS FSSESYSSYP NFTPKATHNF 60 GNASIETPHQ AGTQERPAKQ PKNHTTWNPC TTDHTIMAKA ASSSSSHLIS FDNSNSSLPT 120 SSQQFYGTLD STMKPKNEVE YSNGKLNLTT LISQGSYDPQ TCSPKHEQGI KRAATVTRSP 180 LHAQDHVLAE RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYMKHL QERTKTLEEQ 240 AAKKTVEAVV FVKRTQYSAD DDISSSDENF ESCSDQPLPE IEARVSDKEV LIRVHCEKTK 300 GCLAKILSEI ENLDLTIVNS SVLRFGNSTL DITVIAQMDA AFSMTMKDLV KNLRQSLLKF 360 V

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MDMISSAKWV SDLEMEDPTF IHQYEMNSLD YSLDDLNFQS FSSESYSSYP NFTPKATHNF  60
GNASIETPHQ AGTQERPAKQ PKNHTTWNPC TTDHTIMAKA ASSSSSHLIS FDNSNSSLPT  120
SSQQFYGTLD STMKPKNEVE YSNGKLNLTT LISQGSYDPQ TCSPKHEQGI KRAATVTRSP  180
LHAQDHVLAE RKRREKLSQR FIALSALVPG LKKMDKASVL GDAIKYMKHL QERTKTLEEQ  240
AAKKTVEAVV FVKRTQYSAD DDISSSDENF ESCSDQPLPE IEARVSDKEV LIRVHCEKTK  300
GCLAKILSEI ENLDLTIVNS SVLRFGNSTL DITVIAQMDA AFSMTMKDLV KNLRQSLLKF  360
V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERKRRE
2	191	196	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-68	bHLH family protein