PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001794.1_g020.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 395aa MW: 43542.2 Da PI: 5.1225

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001794.1_g020.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.2	3.2e-17	49	94	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Pav_sc0001794.1_g020.1.mk 49 KGPWSPEEDAILSRLVSKFGARNWSLIARGID-GRSGKSCRLRWCNQ 94 79****************************.*********985 PP
2	Myb_DNA-binding	56.1	8.6e-18	101	145	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Pav_sc0001794.1_g020.1.mk 101 RKPFTDEEDQMIIAAHAFHGNK-WAAIARLLP-GRTDNAIKNHWNST 145 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MEREMEAAYD AAATEFDAEY GGDIGEEATQ AVAGGGGESH RKSGRDRVKG PWSPEEDAIL 60 SRLVSKFGAR NWSLIARGID GRSGKSCRLR WCNQLDPSVK RKPFTDEEDQ MIIAAHAFHG 120 NKWAAIARLL PGRTDNAIKN HWNSTLRRRC MDPDKIKLES GNTVEDVSLD KTKASSEETF 180 SYGDVNSSKS MEGREVSSLE HMDCQYEDKG STEGQFSHEV KEQPTLFRPA ACISAFSVYN 240 HSDSQETGVS FPRLIPVQGP LVQVSKLDVT ISKLLDGVYG ERSIPDQCGH GCCCTNGKNA 300 QNSLLGPEFV DFSESPSFPS FELAAIATDI SNHAWIKSGL ENSSVRAMGD AADRTVPHES 360 QGQMGHFEES RMNNVFRFEE RNDRLTGMNT NVLST

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MEREMEAAYD AAATEFDAEY GGDIGEEATQ AVAGGGGESH RKSGRDRVKG PWSPEEDAIL  60
SRLVSKFGAR NWSLIARGID GRSGKSCRLR WCNQLDPSVK RKPFTDEEDQ MIIAAHAFHG  120
NKWAAIARLL PGRTDNAIKN HWNSTLRRRC MDPDKIKLES GNTVEDVSLD KTKASSEETF  180
SYGDVNSSKS MEGREVSSLE HMDCQYEDKG STEGQFSHEV KEQPTLFRPA ACISAFSVYN  240
HSDSQETGVS FPRLIPVQGP LVQVSKLDVT ISKLLDGVYG ERSIPDQCGH GCCCTNGKNA  300
QNSLLGPEFV DFSESPSFPS FELAAIATDI SNHAWIKSGL ENSSVRAMGD AADRTVPHES  360
QGQMGHFEES RMNNVFRFEE RNDRLTGMNT NVLST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	2e-98	MYB family protein