PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001797.1_g330.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 447aa MW: 49432.8 Da PI: 6.863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001797.1_g330.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.2	6.2e-08	351	391	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L Pav_sc0001797.1_g330.1.mk 351 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 391 69****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MNGSDWDVSD WDGSYITNTS TLLWNNHQAH DLEESLLVSS SGPSAFIPIQ EFQKVQTSHA 60 IMNSNTERAS KSAQIVHQQN PCLLDSVHAM PTLRADQLCQ APLMINKPNY NLMGSLSTGI 120 FMAADHYGDT GKHVQTQVIH GLQDHGRAKP ATTRSVESFD CLLSGTNSNT DTSVEDDDGI 180 SMLFSDCRRN LWNFGAGNNS AISSGESENN ETVVSQSSSD LYVQSQGKKN STKRSHDQSE 240 LHGANHSHFG LLQTDSSTTE GGFRLISENP PNPKKPRSDK RPSSSNINFQ QPSSSVSASS 300 IEEPDPEVIA QMKEMIYRAA AFRPVNLGMD MVERPKRKNV KISSDPQTVA ARQRRERISE 360 RIRVLQRLVP GGSKMDTASM LDEAANYLKF LRSQVKALEN LGQKIESMSN SNIPPTSFAF 420 SFNPSFPMQT HHHVPLHNPN HIHQPHS

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MNGSDWDVSD WDGSYITNTS TLLWNNHQAH DLEESLLVSS SGPSAFIPIQ EFQKVQTSHA  60
IMNSNTERAS KSAQIVHQQN PCLLDSVHAM PTLRADQLCQ APLMINKPNY NLMGSLSTGI  120
FMAADHYGDT GKHVQTQVIH GLQDHGRAKP ATTRSVESFD CLLSGTNSNT DTSVEDDDGI  180
SMLFSDCRRN LWNFGAGNNS AISSGESENN ETVVSQSSSD LYVQSQGKKN STKRSHDQSE  240
LHGANHSHFG LLQTDSSTTE GGFRLISENP PNPKKPRSDK RPSSSNINFQ QPSSSVSASS  300
IEEPDPEVIA QMKEMIYRAA AFRPVNLGMD MVERPKRKNV KISSDPQTVA ARQRRERISE  360
RIRVLQRLVP GGSKMDTASM LDEAANYLKF LRSQVKALEN LGQKIESMSN SNIPPTSFAF  420
SFNPSFPMQT HHHVPLHNPN HIHQPHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	357	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	3e-71	bHLH family protein