PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001801.1_g600.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 192aa    MW: 21492.8 Da    PI: 7.368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001801.1_g600.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-094273132
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                               rg W + Ed +l+++v+q+G  +W +Ia++++
  Pav_sc0001801.1_g600.1.mk 42 RGHWRPAEDSKLKELVAQHGLQNWILIAEHLN 73
                               899***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MLSNLDVGGR VPKTNPRALM KVGALVLLGE LVVVGIQRSC GRGHWRPAED SKLKELVAQH  60
GLQNWILIAE HLNPAEDSKL KELDSKLKEL VAQHGLQNWI LIAEQLNPAE VSKLKELVAQ  120
HGLQNWILIV EQLNPAEVSK LKELVAQHGL QNWNLIVEHL DGRGTCNSVD YYHHSKPNNP  180
SPFHLPYTTP FT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.19e-12MYB family protein