PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001807.1_g120.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 327aa    MW: 35403.9 Da    PI: 8.7401
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001807.1_g120.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-191257147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W++eEd+ l ++v+++G+++W++I++ ++ gR++k+c++rw + 
  Pav_sc0001807.1_g120.1.mk 12 KGPWSPEEDDALQRLVQKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                               79******************************.***********985 PP
2Myb_DNA-binding55.51.3e-1766108347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++T+eEd+ +++a++++G++ W+tIar ++ gRt++ +k++w++ 
  Pav_sc0001807.1_g120.1.mk  66 AFTPEEDDTIIRAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                                79******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    
MAVSRKDMDR IKGPWSPEED DALQRLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
QVEHRAFTPE EDDTIIRAHA RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSDIGVVF  120
PGGGLGGSGG YDGHFLHDHE QPPLKRSVSA GSGMPVFTGL YMSPGSPSGS DMSDSSVVPV  180
MSLSECHVYR PVARSGGVLP LAETTSSSND NNSNNEKQKE NDPTTSLSLS LPGVDSGEVS  240
NRVAATESTQ APVPIPIQNP VPDPAPARAP FQNIPVELLA VMQGMIRKEV RSYMAGLEQS  300
GICMQQAASN DGFRNVAVKR IGVSRIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-88MYB family protein