PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001817.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 215aa    MW: 23864.8 Da    PI: 10.5263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001817.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-114692354
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               ++h+  ErrRR riN  +++Lr++lP++      K++Ka++L ++v+ +++L
  Pav_sc0001817.1_g050.1.mk 46 KKHSDSERRRRMRINGQYATLRTVLPNL-----IKMDKASVLAETVRQVREL 92
                               679************************9.....6************988877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MQSISSYYTK QISFPKGQGV FPVNTIYSKS FFKPKSKAET KVIAAKKHSD SERRRRMRIN  60
GQYATLRTVL PNLIKMDKAS VLAETVRQVR ELKKAVAEVE AACRHSDSDE CVLPGGVDKL  120
SLEQCDGEQE GLVKATLSCD DRPGLISDMT RALSSVKGRV VRAEMVIVGG RSKNVLWIQG  180
LSDGKEGMVT LRRALKVVID RPIFAGLSKR FHLPQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.15e-42bHLH family protein