PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001820.1_g080.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 171aa    MW: 19627.8 Da    PI: 6.2833
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001820.1_g080.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.51.4e-2084171187
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkle 82 
                                +fY++YA  +GFs+r+s+ ++s + g ++ r++vCskeg+r+++ ++ ++  r++r+etr +C+a++ vk    ++ + vtk++
  Pav_sc0001820.1_g080.1.br  84 RFYCNYALAIGFSIRRSRLRRS-EGGVVMGRQWVCSKEGSRSKKWTNrDNMVRTPRKETRENCHATFAVKYCPkRDAYIVTKFV 166
                                5********************9.8999***************9988846677889*****************999********* PP

                       FAR1  83 leHnH 87 
                                +eH+H
  Pav_sc0001820.1_g080.1.br 167 TEHSH 171
                                ****9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    
MDAEASKTNG IQGQNSVPNS EGYFAEAESL EETENAPSLQ ILDSRTEEIT EKSGQFEYDG  60
LNFQNMSIAD LAEREFAKFE EAERFYCNYA LAIGFSIRRS RLRRSEGGVV MGRQWVCSKE  120
GSRSKKWTNR DNMVRTPRKE TRENCHATFA VKYCPKRDAY IVTKFVTEHS H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.24e-13FAR1 family protein