PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001877.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 303aa    MW: 34096.5 Da    PI: 7.2921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001877.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1761.1e-5491371128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+ +yL+kkv++++l++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWk
  Pav_sc0001877.1_g160.1.mk   9 LPPGFRFHPTDEELILHYLTKKVASTPLPV-SIIAEVDIYKFDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWK 91 
                                79****************************.89***************988899****************************** PP

                        NAM  85 atgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+dk+++++  ++++vg+kk Lvfykgr pkg kt+W+mheyrl
  Pav_sc0001877.1_g160.1.mk  92 ATGTDKTIVASlgGRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 137
                                **********9988999***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MMKNPESSLP PGFRFHPTDE ELILHYLTKK VASTPLPVSI IAEVDIYKFD PWELPAKAAF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV ASLGGRQNVG VKKALVFYKG  120
RPPKGIKTNW IMHEYRLPEN PNNYTTTSKT MKLKDLSMRL DDWVLCRIYK KSNVSSSAAV  180
LPIDHEEEVE EEEDFLNDVL LPSLKSPLPG LGHNMSTNNT DLKPQKSSSF SNLLDAMDYS  240
LLTSFLADGQ YSNPTGTVLQ STPNSFNNAT IQSDNISQGH LLNHSLLNHQ QLVLSSPQFQ  300
FQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-96NAC family protein