PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001900.1_g290.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 188aa    MW: 20512.7 Da    PI: 10.3592
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001900.1_g290.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.57.8e-1961111255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +y+GVr+++ +g+++AeIrd      ++ +r++lg+f taeeAa a+++a+ +++g
  Pav_sc0001900.1_g290.1.mk  61 HYRGVRRRP-WGKYAAEIRD----SaRHgARVWLGTFSTAEEAALAYDRAAFRMRG 111
                                8********.**********....33236*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MVSASTQNEL PLNENDSQDM VIYQVLNEAR AINPSFLPQR HQMNHQPNGL EPSNKNIGKK  60
HYRGVRRRPW GKYAAEIRDS ARHGARVWLG TFSTAEEAAL AYDRAAFRMR GTKALLNFPP  120
DVVAASSSPS SSIHRVRPSF SVPSSSNSNS TTSDSSGSSS LLSIGTPRSE SQSNTSNVEA  180
QNMQGPII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.11e-30ERF family protein