PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001925.1_g110.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 309aa MW: 37123.8 Da PI: 8.837

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001925.1_g110.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.2	6.1e-25	65	147	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W+ qe+++L+ +r e+++++ ++k++k lWe ++ km+e+g +rs++qCk+kw+nl +ryk ++++e + ++++p++++ Pav_sc0001925.1_g110.1.mk 65 QWSIQETKELLVIRAELDQTFMETKRNKLLWEVIATKMKEKGHHRSAEQCKCKWKNLVTRYKGCETMEPEA---MRQQFPFYNE 145 7******************************************************************95...56689*** PP trihelix 85 le 86 l+ Pav_sc0001925.1_g110.1.mk 146 LQ 147 98 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MEGHHRHHHQ QQQQHHQPLQ HQTHQLHLQQ QQQQQQQQQL QQQQLQQPLP STISVNVDSS 60 DRFPQWSIQE TKELLVIRAE LDQTFMETKR NKLLWEVIAT KMKEKGHHRS AEQCKCKWKN 120 LVTRYKGCET MEPEAMRQQF PFYNELQAIF AARMQRMLWA EESGAASGSK KKALSSDEEE 180 DNEDSEAENK ASTVRNKKKK KVKMSNIGIS STSGSGSGNN VREILEEFMK QQMQMEMQWR 240 EEFQARENER RLKEMEWRQT MEALENERIM MERRWREREE QRRMREEARA EKRDALITAL 300 LNKLRREDM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-54	Trihelix family protein