PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001938.1_g480.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 767aa MW: 82394.2 Da PI: 6.2982

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001938.1_g480.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	461	507	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq Pav_sc0001938.1_g480.1.mk 461 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 507 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence
MPLSELYRMA GRVDSSQDFE PVNDFVELVW ENGQIMMQGQ SSRTRKSPTC NNSLPSYNPK 60 NRDKDVGNGN IAKTGKFGSV ESVLDEIPLS VPSSEMGLSE DDEMLPWLNY SIDEPLHHEY 120 CHEFLPELST VTANEISSNS NLASMDKRSS SSQVYRDSNT NSAHEGAYLE QRNAPKVTSI 180 DGADVSRPRT GTSQFYPLSS QQSQSLFPSF RSRVSDIVGD NTGSATHPTV CKNSTQVSSA 240 GVFPGIKMQR QDPVMPSNNN SSVVNFSHFS RPAALVKSNL QSIGAVAGSG LSSMERIGTK 300 GKVSAATSNN PPETTLIDSS SGLAKESNSQ CQHITGTSNV ELKPTEAKPL EESCAAKQSE 360 AACQEDTSKN DTNTNHIPCE SANRVLRDGE KTLEPVVASS VCSGNSVERA SDDPTHALKR 420 KSRDTDESEC HSDDVEEESV GVKKIAHARG MGSKRSRAAE VHNLSERRRR DRINEKMRAL 480 QELIPNCNKV DKASMLDEAI EYLKTLQLQV QIMSMGAGLY MPPMMFPAGM QHMHAPRMAH 540 FSPMGLGMGM GMGLGMGFGM GMPDMNGGSS GYPMLQVPPM QGAHFPNSPM AGHAFNGMIG 600 SNLQMFGLPG QGVPMPMQRP PLVPSSGGPF MKSSVGLNAC GAGGPMENAE SAPVSGSKDS 660 VQNMNSQVVQ NTNANSSMNQ TSSQCQATNE GFVQPALVRN NVQAADVDNN RANRSSNGND 720 VVLSRTAILL LSVVGGEKSM MQHLEIGSFA CFRSGRAQLH VAQILVP

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence

MPLSELYRMA GRVDSSQDFE PVNDFVELVW ENGQIMMQGQ SSRTRKSPTC NNSLPSYNPK  60
NRDKDVGNGN IAKTGKFGSV ESVLDEIPLS VPSSEMGLSE DDEMLPWLNY SIDEPLHHEY  120
CHEFLPELST VTANEISSNS NLASMDKRSS SSQVYRDSNT NSAHEGAYLE QRNAPKVTSI  180
DGADVSRPRT GTSQFYPLSS QQSQSLFPSF RSRVSDIVGD NTGSATHPTV CKNSTQVSSA  240
GVFPGIKMQR QDPVMPSNNN SSVVNFSHFS RPAALVKSNL QSIGAVAGSG LSSMERIGTK  300
GKVSAATSNN PPETTLIDSS SGLAKESNSQ CQHITGTSNV ELKPTEAKPL EESCAAKQSE  360
AACQEDTSKN DTNTNHIPCE SANRVLRDGE KTLEPVVASS VCSGNSVERA SDDPTHALKR  420
KSRDTDESEC HSDDVEEESV GVKKIAHARG MGSKRSRAAE VHNLSERRRR DRINEKMRAL  480
QELIPNCNKV DKASMLDEAI EYLKTLQLQV QIMSMGAGLY MPPMMFPAGM QHMHAPRMAH  540
FSPMGLGMGM GMGLGMGFGM GMPDMNGGSS GYPMLQVPPM QGAHFPNSPM AGHAFNGMIG  600
SNLQMFGLPG QGVPMPMQRP PLVPSSGGPF MKSSVGLNAC GAGGPMENAE SAPVSGSKDS  660
VQNMNSQVVQ NTNANSSMNQ TSSQCQATNE GFVQPALVRN NVQAADVDNN RANRSSNGND  720
VVLSRTAILL LSVVGGEKSM MQHLEIGSFA CFRSGRAQLH VAQILVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	466	471	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-56	bHLH family protein