PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001944.1_g070.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 265aa    MW: 28735.9 Da    PI: 8.8085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001944.1_g070.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1359106455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Pav_sc0001944.1_g070.1.mk  59 MHIWTERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 106
                                56678*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MGISTEGHNQ VLPAPGKKRR GGGGVGKNGI IKGSTSPADK GKGSTGAGDG GGESDDHEMH  60
IWTERERRKK MRNMFANLHA LLPQLPPKAD KSTIVDEAVN YIKTLQQTLQ KLQKQKLERL  120
QGATTINFDP SILTKQNVAF GSREEFLANH GSAATINPSN SLLTSHCGPV NFQTWTTPNV  180
VLNICGDEAQ ISVCCPKKAG LLYAICFILE KYKLGVMSAH VSSDCNRSMY MIQAHARGAP  240
DQFLETFPAD EIFKQAAAEI ILMLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-44bHLH family protein