PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001963.1_g530.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 297aa    MW: 33589.9 Da    PI: 7.5568
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001963.1_g530.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix582.5e-1832119286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                                Wt++e+ ++i+a++e++ +lrrg lk  +Weev+  +      ++   +++++qC++k+e+l++r++ +k++ + +   s+s++
  Pav_sc0001963.1_g530.1.mk  32 WTHEETVQMIRAYQEKWYKLRRGPLKSSQWEEVAVTVaarcgyEHAEQSKTATQCRHKMEKLRQRHRTLKKRLRPG---SRSRW 112
                                ************************************99888987778899************************86...6778* PP

                   trihelix  80 pyfdqle 86 
                                p+f+ +e
  Pav_sc0001963.1_g530.1.mk 113 PFFELME 119
                                ****998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MSTPPPPSPT ASASASVPAS PVSTKKAQPL PWTHEETVQM IRAYQEKWYK LRRGPLKSSQ  60
WEEVAVTVAA RCGYEHAEQS KTATQCRHKM EKLRQRHRTL KKRLRPGSRS RWPFFELMES  120
LERGPMPISS RPMAVMPYQP DEEEEEEAQR HGVDVDGEDD DEENSSKVRS IDYILRRPTI  180
VNRFSGGQAS FWQDTAAMAA AAKRSRDAVD GGGGYNGDVV EPPQMGGEMA VELADEIRAF  240
ANRFIGVENT RMEIMKETER CRLEMEKRRI DMILQSQQKI VDSIDKAFGS STNKLSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196105RHRTLKKRLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-49Trihelix family protein