PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0001974.1_g150.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 840aa MW: 94052 Da PI: 7.1082

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0001974.1_g150.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.6	3.9e-10	36	87	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +W t+E++ll++av+++G +W+++a ++ +t+ ck ++++++ Pav_sc0001974.1_g150.1.mk 36 SWGTWEELLLACAVHRFGAQSWDAVATELRkrssnlHLLTPHACKRKFHDLR 87 7*****************************9999997799999999999875 PP
2	Myb_DNA-binding	31.6	3.9e-10	170	221	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 +W t+E++ll++av+++G +W+++a ++ +t+ ck ++++++ Pav_sc0001974.1_g150.1.mk 170 SWGTWEELLLACAVHRFGAQSWDAVATELRkrssnlHLLTPHACKRKFHDLR 221 7*****************************9999997799999999999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence
MNVESVVAEG SCDNGLSDYM IFLMDKPNFP EKQTPSWGTW EELLLACAVH RFGAQSWDAV 60 ATELRKRSSN LHLLTPHACK RKFHDLRRRF SQNDAASGKD DDTPSLPWLD QLRQRRLDEL 120 RRELQRYDHS VVSAVEGGEI KGEGSCDNGL SDYMIFLMDK PNFPEKQTPS WGTWEELLLA 180 CAVHRFGAQS WDAVATELRK RSSNLHLLTP HACKRKFHDL RRRFSQNDAA SGKDDDTPSL 240 PWLDQLRQRR LDELRRELQR YDHSVVSLQL KVERLKEVRE QSSRETEKPV EKSDLEKTGE 300 EEIEHKDAEP EDNSPEKKGI SGEVSEHDDR SCNESNTTDP KHEIPETEVD DEDKGSRQAD 360 AAGEEIEPVE KLDNPVVEDS CNGSSDSVMK EPAVVEAEKG NSDELKESVA ESKGKEEEEE 420 GTKESPSNSE VQSSASLSRK LGQEPKSGGP GGPDRPEEPS EPDQEDESPA MKGVPVESQP 480 LVEFLGILRS HKFASFFERR LHSQETPIYK NMIRQHVDFE LVQTRLEGGR YEPCSRFLFF 540 RDLLLICNNA MVFFGKKSPE YKAARELQLL VSKEMVFQAP KQDPPPKEET PTPPAPPLNQ 600 DPETSDSLLA KSKLSLPLNA CRKRSSITAR ASTSSSSGPD RKKEQITTSF RDVKPAISWK 660 QKEESSDEVE KLHVTKKRRK ERLRSSSRNN SSKNGRSRGN TNDRNSEAND GFSSRVVTSN 720 ENSESKAETE KKSNTNASGK KRSAADFLSR MKRSSTSKTG LSTETSKTPD NNSKGGRAEQ 780 RKNGNGKGNA QKDQGSRRGS GGRQAAKEQG SPTKRSVGRP SKRAAAPATA GPAKRTRQRG

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence

MNVESVVAEG SCDNGLSDYM IFLMDKPNFP EKQTPSWGTW EELLLACAVH RFGAQSWDAV  60
ATELRKRSSN LHLLTPHACK RKFHDLRRRF SQNDAASGKD DDTPSLPWLD QLRQRRLDEL  120
RRELQRYDHS VVSAVEGGEI KGEGSCDNGL SDYMIFLMDK PNFPEKQTPS WGTWEELLLA  180
CAVHRFGAQS WDAVATELRK RSSNLHLLTP HACKRKFHDL RRRFSQNDAA SGKDDDTPSL  240
PWLDQLRQRR LDELRRELQR YDHSVVSLQL KVERLKEVRE QSSRETEKPV EKSDLEKTGE  300
EEIEHKDAEP EDNSPEKKGI SGEVSEHDDR SCNESNTTDP KHEIPETEVD DEDKGSRQAD  360
AAGEEIEPVE KLDNPVVEDS CNGSSDSVMK EPAVVEAEKG NSDELKESVA ESKGKEEEEE  420
GTKESPSNSE VQSSASLSRK LGQEPKSGGP GGPDRPEEPS EPDQEDESPA MKGVPVESQP  480
LVEFLGILRS HKFASFFERR LHSQETPIYK NMIRQHVDFE LVQTRLEGGR YEPCSRFLFF  540
RDLLLICNNA MVFFGKKSPE YKAARELQLL VSKEMVFQAP KQDPPPKEET PTPPAPPLNQ  600
DPETSDSLLA KSKLSLPLNA CRKRSSITAR ASTSSSSGPD RKKEQITTSF RDVKPAISWK  660
QKEESSDEVE KLHVTKKRRK ERLRSSSRNN SSKNGRSRGN TNDRNSEAND GFSSRVVTSN  720
ENSESKAETE KKSNTNASGK KRSAADFLSR MKRSSTSKTG LSTETSKTPD NNSKGGRAEQ  780
RKNGNGKGNA QKDQGSRRGS GGRQAAKEQG SPTKRSVGRP SKRAAAPATA GPAKRTRQRG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	676	680	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-59	MYB_related family protein