PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0001974.1_g370.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 130aa    MW: 13605.1 Da    PI: 9.0176
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0001974.1_g370.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP76.44.6e-2479126148
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                                +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsr
  Pav_sc0001974.1_g370.1.mk  79 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPKVIVAGLEQRFCQQCSR 126
                                6**********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MEMSSSSMTE SGSSSSSSPP NSSTESLNGL KFGQKIYFED ASLGAPYKSG SAGSSSSSGA  60
TPPKKQRAGH LAHPGQPPRC QVEGCQVDLS DAKAYYSRHK VCGLHSKTPK VIVAGLEQRF  120
CQQCSRSAST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-28SBP family protein