PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002080.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 257aa    MW: 28698.9 Da    PI: 8.7305
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002080.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23149236183
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+k+lt sd++++g +++p++ ae+        ++++ s++l+++d++ +sW++++iyr++++r++lt+GW+ Fv a++L++gD
  Pav_sc0002080.1_g180.1.mk 149 FCKTLTASDTSTHGGFSVPRRAAEKLfpqldfTMQPP-SQELVVRDLHDNSWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRAGD 231
                                99*********************999*****955554.459******************************************* PP

                                EEEEE CS
                         B3  79 fvvFk 83 
                                +v+F 
  Pav_sc0002080.1_g180.1.mk 232 SVLFI 236
                                ****7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MIMGSVEEKI KAGGLLSGAQ SSILDEMKLL KELQDHSGSR KAINSELWHA CAGPLVCLPQ  60
VGSLSYYFPQ GHSEQVAVST KRTATSQIPN YPNLPSQLLC QVQNVTLHAD KETDEIYAQM  120
SLKPVNSEKD VFPVPDFGLK PSKHPSEFFC KTLTASDTST HGGFSVPRRA AEKLFPQLDF  180
TMQPPSQELV VRDLHDNSWT FRHIYRGQPK RHLLTTGWSL FVGAKRLRAG DSVLFIRPVK  240
QHTHILELRC QLPLTVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-134ARF family protein