PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002088.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 154aa    MW: 18179.8 Da    PI: 9.7214
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002088.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.8e-171253344
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                               i n++ r+ tf kR++ i KKA ELS LCd++v++ii+  ++
  Pav_sc0002088.1_g010.1.mk 12 ITNEIARKMTFRKRKKSIYKKADELSKLCDIDVCLIIYEADQ 53
                               89***********************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
MPPRARRSLE LITNEIARKM TFRKRKKSIY KKADELSKLC DIDVCLIIYE ADQKKGRAIQ  60
SETWPQDSTK FNRIFNKYKA SKDIHVPGLK QNFDLSDFYN ASKKEDVDRK FEKMYPTWDD  120
QIDEFSQVEL FKLIGSLEAK IQASSKKIDF VEQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.11e-20M-type_MADS family protein