PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002119.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 284aa MW: 33139.4 Da PI: 8.0194

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002119.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76	5.8e-24	36	118	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W +e+++Li++r e+e r ++ +++ k+lWe+vs+km+ergf+r+p+qCk+kw+nl ryk ++++ + s ++cp+f+ Pav_sc0002119.1_g010.1.mk 36 QWAPEETRELIAIRGELEIRNSNlANRSKALWEAVSSKMAERGFNRTPEQCKCKWKNLLIRYKGKETSDPE----SGRECPFFE 115 7***************9988768999********************************9999997....4667*** PP trihelix 84 qle 86 +l+ Pav_sc0002119.1_g010.1.mk 116 ELQ 118 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MYGAGGDEEE GMGMGSGGTG MMKKMMTSPA GGGSGQWAPE ETRELIAIRG ELEIRNSNLA 60 NRSKALWEAV SSKMAERGFN RTPEQCKCKW KNLLIRYKGK ETSDPESGRE CPFFEELQAV 120 FTERANNMQR LLLESETGSA RSKKMGKRKL RPGRSSDEFS EDPDEEDEDD KKRKGERVIM 180 PKATNSASGT SSSSIQDMLK AFFQQQQRME MEWREMMERR EQERRMFEQE WRQKMEKVER 240 ERLMVEQAWR EREEQRRMRE ESRAERRDAL LTTLLNKLIN QTNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	150	KKMGKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	2e-27	Trihelix family protein