PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002206.1_g390.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 460aa MW: 49994.9 Da PI: 8.2653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002206.1_g390.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	9e-12	74	100	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Pav_sc0002206.1_g390.1.mk 74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	118	142	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ Pav_sc0002206.1_g390.1.mk 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142 789********************96 PP
3	zf-CCCH	38	2.7e-12	165	187	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ Pav_sc0002206.1_g390.1.mk 165 SCPYYMRTGSCKFGPACKFHHPQ 187 6********************97 PP
4	zf-CCCH	36.1	1.1e-11	304	329	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ Pav_sc0002206.1_g390.1.mk 304 DQPECRYFMSTGTCKYGIDCKYHHPK 329 689*********************96 PP
5	zf-CCCH	32.8	1.2e-10	346	372	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ +G+CkyG++C+F H++ Pav_sc0002206.1_g390.1.mk 346 PGQPVCSYYIMYGICKYGPTCRFDHPF 372 5789*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence
MSLIGETEKS RAKQNKGRVY TTSVLPMPET RQAQKNAVPN QSDGNVEEAF WRLTINDNQD 60 GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQAAQYNG ELPERVGQPD 120 CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA 180 CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM 240 PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLLSSSSLP 300 HRPDQPECRY FMSTGTCKYG IDCKYHHPKE RIAESATHPL GLPSRPGQPV CSYYIMYGIC 360 KYGPTCRFDH PFVEHSAGYN FGMNALPLDS SLLGYPRSWS VAHGLETSPS ISAKFPDGVK 420 KPVNNKYENS DTKIADDSPE QAGSVPPSPT SSEPVQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence

MSLIGETEKS RAKQNKGRVY TTSVLPMPET RQAQKNAVPN QSDGNVEEAF WRLTINDNQD  60
GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQAAQYNG ELPERVGQPD  120
CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA  180
CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM  240
PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLLSSSSLP  300
HRPDQPECRY FMSTGTCKYG IDCKYHHPKE RIAESATHPL GLPSRPGQPV CSYYIMYGIC  360
KYGPTCRFDH PFVEHSAGYN FGMNALPLDS SLLGYPRSWS VAHGLETSPS ISAKFPDGVK  420
KPVNNKYENS DTKIADDSPE QAGSVPPSPT SSEPVQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-115	C3H family protein