PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002207.1_g120.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 354aa MW: 40292.9 Da PI: 7.1489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002207.1_g120.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	193	212	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Pav_sc0002207.1_g120.1.mk 193 FSCPVCYKTFNRYNNMQMHM 212 89*****************9 PP
2	zf-C2H2	14.5	0.0001	277	299	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Pav_sc0002207.1_g120.1.mk 277 FMCRKCGKAFAVRGDWRTHEKNC 299 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MADYPYSSNF FPGLFKFNPL YQHHHEQPPN PPPPPPPHPY AHNFFLNQSH SFYCTTQQTV 60 TSRPPSPPLR EALPLLSRLS PTNQQQQHHL LHENQQDHHQ YKDQDEEEDD DDDESVTVAL 120 HIGLPSPSAA EMASVLSAAA VASSSSEIST HHHEKLDHGG DNDSAGYPMS CRLNKGQYWI 180 PTPSQILIGP TQFSCPVCYK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY 240 CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG 300 KLWYCICGSD FKHKRSLKDH IKAFGNGHAA YGIDGFEEED DPASEVEQDN ESMQ

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MADYPYSSNF FPGLFKFNPL YQHHHEQPPN PPPPPPPHPY AHNFFLNQSH SFYCTTQQTV  60
TSRPPSPPLR EALPLLSRLS PTNQQQQHHL LHENQQDHHQ YKDQDEEEDD DDDESVTVAL  120
HIGLPSPSAA EMASVLSAAA VASSSSEIST HHHEKLDHGG DNDSAGYPMS CRLNKGQYWI  180
PTPSQILIGP TQFSCPVCYK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY  240
CCTPGCRNNI DHPRAKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG  300
KLWYCICGSD FKHKRSLKDH IKAFGNGHAA YGIDGFEEED DPASEVEQDN ESMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-141	C2H2 family protein