PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002208.1_g180.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

SRS

Protein Properties

Length: 368aa MW: 39686.1 Da PI: 7.1529

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002208.1_g180.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.2	6.4e-70	130	285	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrel 78 s +++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerq+q + +++++++++ + +++kr+re+ Pav_sc0002208.1_g180.1.mk 130 SSGMNCQDCGNQAKKDCPHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSGLQQNQQQQEhqqqqlqfRGDNPKRQRES 213 5689***********************************************9999888877765667777666777777775 PP DUF702 79 kskkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + + +l++ +l+s++s le +++P+evss+avfrcvrvs++dd+++++aYqtav+igGhvfkG+LydqG++ Pav_sc0002208.1_g180.1.mk 214 -QGGAGSLACVRLPSNTSG--LELAQFPSEVSSPAVFRCVRVSAMDDADDQYAYQTAVNIGGHVFKGLLYDQGPD 285 .777889999999998765..89999*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MAGLFCLGGR DQAPTSSSKQ EGRGGGGGDQ ERVEGGGGNL YLYRSSNEGQ AEIYNKGFEI 60 WPSQYHHPHQ NLNYYSFGVD PSYSRRHLHN DDNDHNHNHN DVVSADDLSS GLRLAVMRQG 120 GGGGLGGSSS SGMNCQDCGN QAKKDCPHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ 180 EQFSGLQQNQ QQQEHQQQQL QFRGDNPKRQ RESQGGAGSL ACVRLPSNTS GLELAQFPSE 240 VSSPAVFRCV RVSAMDDADD QYAYQTAVNI GGHVFKGLLY DQGPDGQYYP SSSTGGGGES 300 SSGGRHDHQE GGGAHPHHQQ HNLVTVAATA GTTSHGGNPS TTLLDPSLFP TPLNAFMAGT 360 QIFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MAGLFCLGGR DQAPTSSSKQ EGRGGGGGDQ ERVEGGGGNL YLYRSSNEGQ AEIYNKGFEI  60
WPSQYHHPHQ NLNYYSFGVD PSYSRRHLHN DDNDHNHNHN DVVSADDLSS GLRLAVMRQG  120
GGGGLGGSSS SGMNCQDCGN QAKKDCPHMR CRTCCKSRGF QCQTHVKSTW VPAAKRRERQ  180
EQFSGLQQNQ QQQEHQQQQL QFRGDNPKRQ RESQGGAGSL ACVRLPSNTS GLELAQFPSE  240
VSSPAVFRCV RVSAMDDADD QYAYQTAVNI GGHVFKGLLY DQGPDGQYYP SSSTGGGGES  300
SSGGRHDHQE GGGAHPHHQQ HNLVTVAATA GTTSHGGNPS TTLLDPSLFP TPLNAFMAGT  360
QIFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-71	SRS family protein