PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002208.1_g580.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 458aa MW: 49735.4 Da PI: 7.2251

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002208.1_g580.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	345	383	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Pav_sc0002208.1_g580.1.mk 345 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 383 7788899*******998.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MESANLHHQH HQLQENLVGS SSLAATPSCY AVGTKHAWTP SATLSSSVNS SNSGLDPLNS 60 SMVPDLGFHW LTNITSEHQS PHDLAKIKEE LTSSSSSDHH HHHHNSFPKL TEMLTSAAAS 120 ASIDHDQYYQ CMKNEEKDQL IMNDLSEKLL LKTLSSGCQL NSIINPHHHQ ISSAGEFYSN 180 DHHHHLLHNS NLIGGVPPGM PSRSGGHFSQ IYPSINVSNL NRSLSSSSIS SSSLDMNLQA 240 MDLLGAAARF STGTSSSFST QPNSHDTLGL YKETHDSFAT LQQIHQSTDP HRLSCGNNNK 300 ISSFDNEITE VKRPGSSIEP KVTQATAPKK SRLESRTACP PFKVRKEKLG DRIAALQQLV 360 APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNK SCKTMQGGVT EINGNGETKR 420 DLRSRGLCLV PLSCMSYVTS DVGEGGSIWP APNFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MESANLHHQH HQLQENLVGS SSLAATPSCY AVGTKHAWTP SATLSSSVNS SNSGLDPLNS  60
SMVPDLGFHW LTNITSEHQS PHDLAKIKEE LTSSSSSDHH HHHHNSFPKL TEMLTSAAAS  120
ASIDHDQYYQ CMKNEEKDQL IMNDLSEKLL LKTLSSGCQL NSIINPHHHQ ISSAGEFYSN  180
DHHHHLLHNS NLIGGVPPGM PSRSGGHFSQ IYPSINVSNL NRSLSSSSIS SSSLDMNLQA  240
MDLLGAAARF STGTSSSFST QPNSHDTLGL YKETHDSFAT LQQIHQSTDP HRLSCGNNNK  300
ISSFDNEITE VKRPGSSIEP KVTQATAPKK SRLESRTACP PFKVRKEKLG DRIAALQQLV  360
APFGKTDTAS VLMEAIGYIK FLQNQVETLS VPYMKSSRNK SCKTMQGGVT EINGNGETKR  420
DLRSRGLCLV PLSCMSYVTS DVGEGGSIWP APNFGGGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-56	bHLH family protein