PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002250.1_g170.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

ARF

Protein Properties

Length: 681aa MW: 75315.7 Da PI: 6.6416

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002250.1_g170.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.1	7.9e-24	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +g Pav_sc0002250.1_g170.1.mk 116 FCKILTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAG 197 99**************************9543..445569************************************** PP -EEEEEE-SSSEE..EEEEE- CS B3 78 DfvvFkldgrsefelvvkvfr 98 D++vF + ++el+v+v+r Pav_sc0002250.1_g170.1.mk 198 DSFVFLR--GGNGELRVGVRR 216 **4..378899**98 PP
2	Auxin_resp	103.2	3.2e-34	242	321	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++t++ F v+Y+Pr+ s+F++ ++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d+++ +W++SkWrsLk Pav_sc0002250.1_g170.1.mk 242 ATHAVATQTLFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISS-HWSHSKWRSLK 321 689*************6..9******************************************777.*******96 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN 60 LPSKILCRVL NINLMAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL 120 TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL 180 LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA 240 TATHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG 300 TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN 360 KRPRPAAEIP ALDATSSTAP ALWNSGLTQS HDMSPPSVAT EGKRSENHAL WHHQQADVIS 420 NNNSISRTQT DGGWLSQTGG SKLMFQDAMD DTKFFSAGTV FSGYSTPNSS KLKNDSMCDH 480 VENVKKTETA TSCRIFGIEF FNHSASSPSM EKTPLQPISA STGTTEGRVS NSLAAESDQK 540 SDVSKASKES KPGQLQVSLK ETQAKQSCST STRSRTKVQM QGMAVGRAVD LTILEGYDQL 600 IDELEEMFDI KGQIHPGNIW QIVFTDNEGD MMLMGDDPWA EFCDMVKRIF ICSSQDVKKI 660 SAGCKLPLSS LEVEGTVTSS D

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MANREGGDLY PELWKACAGP LVEVPRSNER VFYFPQGHME QLEASSPTNK ELNQEIPQFN  60
LPSKILCRVL NINLMAEQET DEVYAQITLL PDTNQAEPTS PDPSLPEPQR STVHSFCKIL  120
TASDTSTHGG FSVLRKHATE CLPPLDMTQA TPTQELVARD LHGYEWRFKH IFRGQPRRHL  180
LTTGWSTFVT SKRLSAGDSF VFLRGGNGEL RVGVRRLARQ QSSMPSSVIS SQSMHVGVLA  240
TATHAVATQT LFVVYYKPRT SQFIIGLNKY LEAVNNKFSV GMRFKMRFEG EDAPERRFSG  300
TIIGLEDISS HWSHSKWRSL KVHWDESASV PRPDRVSPWE IEPFVASIPA SVPQPSAVKN  360
KRPRPAAEIP ALDATSSTAP ALWNSGLTQS HDMSPPSVAT EGKRSENHAL WHHQQADVIS  420
NNNSISRTQT DGGWLSQTGG SKLMFQDAMD DTKFFSAGTV FSGYSTPNSS KLKNDSMCDH  480
VENVKKTETA TSCRIFGIEF FNHSASSPSM EKTPLQPISA STGTTEGRVS NSLAAESDQK  540
SDVSKASKES KPGQLQVSLK ETQAKQSCST STRSRTKVQM QGMAVGRAVD LTILEGYDQL  600
IDELEEMFDI KGQIHPGNIW QIVFTDNEGD MMLMGDDPWA EFCDMVKRIF ICSSQDVKKI  660
SAGCKLPLSS LEVEGTVTSS D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	361	365	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G23980.1	0.0	ARF family protein