PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002250.1_g270.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 140aa    MW: 15992.6 Da    PI: 6.2648
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002250.1_g270.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.55.9e-2050138190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                                +fYn+YAk++GFsvr   +++sk+++ei ++++v +keg  ++e ++   ++r+r + + gC+ak+   k++   k+ ++++++
  Pav_sc0002250.1_g270.1.br  50 NFYNNYAKQAGFSVRSYCQQRSKTSNEILRKEYVRYKEGVYSKEVSN--GSERRRGVVQSGCNAKIAFLKTReGTKYIISNFVE 131
                                6******************************************9998..7888899999*******987776699********* PP

                       FAR1  84 eHnHela 90 
                                 HnH+l+
  Pav_sc0002250.1_g270.1.br 132 GHNHALT 138
                                *****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MGSPQEGLGT YEFMEDTNEN NSDLVFNPQV EDQHVPKIGQ EFESLEDAYN FYNNYAKQAG  60
FSVRSYCQQR SKTSNEILRK EYVRYKEGVY SKEVSNGSER RRGVVQSGCN AKIAFLKTRE  120
GTKYIISNFV EGHNHALTAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-15FAR1 family protein