PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002264.1_g160.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 259aa MW: 29757.1 Da PI: 8.6743

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002264.1_g160.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	31	119	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn YA ++GF + s++++ + +ge+t++++vC k+g++ +++ + ++rr+r trtgCkakl + k + ++k+ v +++ Pav_sc0002264.1_g160.1.br 31 NFYNMYAAKAGFGIHCSTTSTCTFTGEVTRKEYVCCKQGYALTSTIS--RKRRQRGCTRTGCKAKLAILKVNeKNKYTVVGFNE 112 6***************************************99888..9*************988877******* PP FAR1 84 eHnHela 90 HnH+++ Pav_sc0002264.1_g160.1.br 113 VHNHDMT 119 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MECEGQVTLE VSSELKSKLG LEFDCCEDVF NFYNMYAAKA GFGIHCSTTS TCTFTGEVTR 60 KEYVCCKQGY ALTSTISRKR RQRGCTRTGC KAKLAILKVN EKNKYTVVGF NEVHNHDMTT 120 VDKVHLLRSH RNLTESTKAY SAHMRKVNIP VHKQVSLLEV QVGGLENVGF VRRDVYNYAR 180 DVRGEVIGHD AELLKEHFLA EQGKNESFYF NMEVDLEGMM GNVFWADARS RRAYVFFGMW 240 WYLIQRSTRT AMGWSLRLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	SRKRRQ
2	78	104	RKRRQRGCTRTGCKAKLAILKVNEKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-35	FAR1 family protein