PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002264.1_g280.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 457aa MW: 50895.6 Da PI: 6.8391

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002264.1_g280.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	103.3	3.9e-32	158	240	2	81
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceae 76 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ +++++ Pav_sc0002264.1_g280.1.mk 158 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELpswnphsvsTTTPS------ 235 79**************************************************************54444433311111...... PP TCP 77 sssss 81 + + + Pav_sc0002264.1_g280.1.mk 236 TAVTA 240 11111 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
LDPQRNHHHH YLHLPLHQNQ NPIINFTHQQ QGQEEEEEDH QNHQAFNFQQ HPYLQQADQQ 60 QQHHQHFFGG LLLDTRSTEA AELQAQQQEA PKKRNFFTSS SSTLGEQSIE YARSKMGDTH 120 HHHHPQATTS SRLGIRPSSG LSADIVEVVR GSHIVRSTGR KDRHSKVCTA KGPRDRRVRL 180 AAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKAAIDELDE LPSWNPHSVS TTTPSTAVTA 240 METQNPTTTG FHCFAAVDAI GSANRRATMV GSGVSEQIVQ NQNPLTNSTL LPPSLDSDAI 300 ADTIKSFFPM GASAGAAEAP SSTLQFQNYP PDLLSRTSSQ SQDLRLSLHS FQDPILLQHQ 360 QAQAQHHQAQ THQNEQTLFS GTQQQNPLGF DGWTEHHHQQ QQAEMNRFQR MVAWNSAGGG 420 DTGGGFSGFH IPARIHGEEE HDGISDKPSS ASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

LDPQRNHHHH YLHLPLHQNQ NPIINFTHQQ QGQEEEEEDH QNHQAFNFQQ HPYLQQADQQ  60
QQHHQHFFGG LLLDTRSTEA AELQAQQQEA PKKRNFFTSS SSTLGEQSIE YARSKMGDTH  120
HHHHPQATTS SRLGIRPSSG LSADIVEVVR GSHIVRSTGR KDRHSKVCTA KGPRDRRVRL  180
AAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKAAIDELDE LPSWNPHSVS TTTPSTAVTA  240
METQNPTTTG FHCFAAVDAI GSANRRATMV GSGVSEQIVQ NQNPLTNSTL LPPSLDSDAI  300
ADTIKSFFPM GASAGAAEAP SSTLQFQNYP PDLLSRTSSQ SQDLRLSLHS FQDPILLQHQ  360
QAQAQHHQAQ THQNEQTLFS GTQQQNPLGF DGWTEHHHQQ QQAEMNRFQR MVAWNSAGGG  420
DTGGGFSGFH IPARIHGEEE HDGISDKPSS ASSNSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	3e-67	TCP family protein