PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002327.1_g420.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 202aa    MW: 22265.4 Da    PI: 10.1123
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002327.1_g420.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.32e-1118118283
                                EEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS................-EEEEEE..EEETTE..EEE-TTHH CS
                         B3   2 fkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg................rsWevkliyrkksgr..yvltkGWk 66 
                                +k+l  sdv  + +r+++p k +++  ++++ +++l+l++ ++                ++++++l+ +  +g+  y l  GW+
  Pav_sc0002327.1_g420.1.mk  18 EKELFDSDVADNnQRFSIPMKQVKKDFLSEKYQTELKLRNGHNqkhligipvkvldpslKEYTLRLKKWTMGGSivYNLVLGWR 101
                                6788889998775899*******999555554555555555555555555555555555*******98888888789999**** PP

                                HHHHHHT--TT-EEEEE CS
                         B3  67 eFvkangLkegDfvvFk 83 
                                e +kan+Lk+gD++ + 
  Pav_sc0002327.1_g420.1.mk 102 EIAKANKLKTGDTLQLW 118
                                ************99765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MKNRISSISG GDLKLVIEKE LFDSDVADNN QRFSIPMKQV KKDFLSEKYQ TELKLRNGHN  60
QKHLIGIPVK VLDPSLKEYT LRLKKWTMGG SIVYNLVLGW REIAKANKLK TGDTLQLWSF  120
RDNSNKLGFA LVKVSTTTME VDQSGLGAST SSQNGTNSHT LSTAKVSKTK VEVQQCRHGA  180
STCSSAQNGQ TGSSISCISH DC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.15e-11B3 family protein