PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002327.1_g530.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 354aa MW: 40174.9 Da PI: 4.2682

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002327.1_g530.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.8e-12	188	231	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Pav_sc0002327.1_g530.1.mk 188 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 231 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MELSEHSFLE ELLALRRDST WETIPTEMNE FLSSSGSWGN FDYLDQNPPT FFPNSSCTQE 60 FSPPFEPNLS NCYNNNNSTF NEAYYPLGFG AGEDGLSAQQ QLTDSSYNTL DTPPFPVQED 120 NPWSMLEEEE LGLLGDEIHN LETQAEAACK MEPIQSPDQV PVFNMGMCEE RNNRGNSKKL 180 QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERINNLQQ 240 EIETDADQLN VMSLFKDVKP NEMLVRNSPK FDVQRRNVDT RIDICCAGKP GLLLSTVSTL 300 EALGLEIQQC VISCFNDFAM QASCSEDFDQ RTTVTSEDIK QALFRNAGYG GRCL

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MELSEHSFLE ELLALRRDST WETIPTEMNE FLSSSGSWGN FDYLDQNPPT FFPNSSCTQE  60
FSPPFEPNLS NCYNNNNSTF NEAYYPLGFG AGEDGLSAQQ QLTDSSYNTL DTPPFPVQED  120
NPWSMLEEEE LGLLGDEIHN LETQAEAACK MEPIQSPDQV PVFNMGMCEE RNNRGNSKKL  180
QGQPSKNLMA ERRRRKRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE LLERINNLQQ  240
EIETDADQLN VMSLFKDVKP NEMLVRNSPK FDVQRRNVDT RIDICCAGKP GLLLSTVSTL  300
EALGLEIQQC VISCFNDFAM QASCSEDFDQ RTTVTSEDIK QALFRNAGYG GRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	191	198	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-89	bHLH family protein