PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002360.1_g010.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 302aa    MW: 32471.6 Da    PI: 7.659
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002360.1_g010.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601011.1e-3141081100
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+
  Pav_sc0002360.1_g010.1.mk   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGL 87 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelallkee 100
                                ++++++ql+q+++e++l +++
  Pav_sc0002360.1_g010.1.mk  88 LWSGSWQLCQAAVEAVLKGHP 108
                                **************9998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGHPIT SITSEAAADG  120
HGPPLKAYDI RHVSKDENSA ASNEPKQAKT RYRFKRSVVK PKASKVGSGS GSGADDSAKP  180
SWAGCCADEF NRSTSHESSL SHQSEAAANV DGESKETESM VSSETAEAEL LFRAEPESAR  240
KRSEPVEEGE LALELTLGLE PQSRAQQVVP VKKRRIEAYG LGGRSSADDG ACKMELGLDL  300
VA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-95LBD family protein