PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002360.1_g820.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 369aa MW: 41541.4 Da PI: 4.9589

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002360.1_g820.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTteEd llvd+++++G+g+W+ ++ g+ R++k+c++rw +yl Pav_sc0002360.1_g820.1.mk 14 KGPWTTEEDALLVDYIQKHGPGNWRNLPKDAGLERCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.8e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Pav_sc0002360.1_g820.1.mk 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MGRAPCCDKN GLKKGPWTTE EDALLVDYIQ KHGPGNWRNL PKDAGLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG 120 IDPVTHAPRI DLLDLSSILS SYMCNNPAAA LLNLSSLLSS TQQQQPLVNP ELLRLATNLL 180 SIKQENPELC SQNYNLHDQN QLGNSQQQNS QVLPPLQSHD QLQDLIQGDF SADVAKMKQL 240 MQVINAEGYS PNMTNFNGPT FSQENMVPSN LGADHQTAVC QPSYVPCTTS SDPTNIPDLP 300 ENYFQSLNYN RSSDFSFDSV MSTPYSSPTG LNSSGTYINS STEDEKESYC SDWWKFEIPE 360 SALDINDIM

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MGRAPCCDKN GLKKGPWTTE EDALLVDYIQ KHGPGNWRNL PKDAGLERCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG  120
IDPVTHAPRI DLLDLSSILS SYMCNNPAAA LLNLSSLLSS TQQQQPLVNP ELLRLATNLL  180
SIKQENPELC SQNYNLHDQN QLGNSQQQNS QVLPPLQSHD QLQDLIQGDF SADVAKMKQL  240
MQVINAEGYS PNMTNFNGPT FSQENMVPSN LGADHQTAVC QPSYVPCTTS SDPTNIPDLP  300
ENYFQSLNYN RSSDFSFDSV MSTPYSSPTG LNSSGTYINS STEDEKESYC SDWWKFEIPE  360
SALDINDIM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-93	MYB family protein