PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002360.1_g910.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 190aa    MW: 21431.6 Da    PI: 5.9382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002360.1_g910.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151468146
                               TSSS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqk 46
                               +g+W++eEd  l  +++++G             W+ Ia++++ gRt++++k++w++
  Pav_sc0002360.1_g910.1.mk 14 KGAWSPEEDNTLRAYIEEHGHLnwrslpkfagAWSQIAAKLP-GRTDNEIKNHWHT 68
                               79******************88********************.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MVRAPFYDKS GVKKGAWSPE EDNTLRAYIE EHGHLNWRSL PKFAGAWSQI AAKLPGRTDN  60
EIKNHWHTRI KNLTKQNPTS SQLAKEQPCK HESSPTVTSQ NTELGAQSGP KFDASLHQIL  120
ESSPLSPETF SSDSSSLSSN QASASTTMSW FNESSGDFWT EPFQLKVQSN YPVNYLREEE  180
VMPTWQENID
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.14e-22MYB family protein