PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002375.1_g200.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 547aa MW: 56936.4 Da PI: 8.2597

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002375.1_g200.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pav_sc0002375.1_g200.1.mk 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.6	4.6e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Pav_sc0002375.1_g200.1.mk 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPAKK KRNLPGMPDP EAEVIALSPT 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN 120 PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KAQTLAIDGS DGNQNSNLNN QSPNPNAKGV VASPPPPPLT 240 PSNTVVSPAL SIQSSELPEN PIGLSPPTPA TTCLTTTAIS TTTTTTTTTT TTTSTGNCNN 300 GSSVFASIFA PSTASALISQ PPQTSSPSSF SNQVSTLGRP DGSTTIPTVS SINEPTSLSL 360 STSLYLSSNG SSLFPTPEPQ DHRHYTQPAV MSATALLQKA AQMGAAASNA SLLRGFGLAT 420 SSSSPSQENS TALQWNKPES GGGTTQMAAG VGLELLSTAS AAHLTDLMMG PPSQFGGQPM 480 TRDLLGLSIG VGSSGSGAST GGLSALLNSF GGGGSGFDVA AAAAAAYGGG GGAGSSQRES 540 WEGAQDR

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTLPEPPAKK KRNLPGMPDP EAEVIALSPT  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN  120
PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KAQTLAIDGS DGNQNSNLNN QSPNPNAKGV VASPPPPPLT  240
PSNTVVSPAL SIQSSELPEN PIGLSPPTPA TTCLTTTAIS TTTTTTTTTT TTTSTGNCNN  300
GSSVFASIFA PSTASALISQ PPQTSSPSSF SNQVSTLGRP DGSTTIPTVS SINEPTSLSL  360
STSLYLSSNG SSLFPTPEPQ DHRHYTQPAV MSATALLQKA AQMGAAASNA SLLRGFGLAT  420
SSSSPSQENS TALQWNKPES GGGTTQMAAG VGLELLSTAS AAHLTDLMMG PPSQFGGQPM  480
TRDLLGLSIG VGSSGSGAST GGLSALLNSF GGGGSGFDVA AAAAAAYGGG GGAGSSQRES  540
WEGAQDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-113	C2H2 family protein