PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002433.1_g080.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 323aa    MW: 36234.7 Da    PI: 7.0926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002433.1_g080.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.4e-191562148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               +g+WTteEde+l d+++++G g+W++ ++  g++R++k+c++rw +yl
  Pav_sc0002433.1_g080.1.mk 15 KGPWTTEEDEKLMDYIARHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                               79********************************************97 PP
2Myb_DNA-binding50.54.8e-1668113148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++++E+  +++++   G++ W++Ia +++ gRt++++k++w+++l
  Pav_sc0002433.1_g080.1.mk  68 RGKFSEDEERVIINLHSVVGNK-WSKIATHLP-GRTDNEIKNYWNTHL 113
                                89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MGRSPSCDEQ SGLKKGPWTT EEDEKLMDYI ARHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEERVII NLHSVVGNKW SKIATHLPGR TDNEIKNYWN THLRKKLLHM  120
GIDPNTHKPR TDLNHLLNLS QLLRAANVGQ MNMSSWDNAL SLRLQAGAAQ LAKMQLLQHL  180
CMQFVNSSSS AAAPPPPLPN IDMMSTFGYQ NLNQFGGQAN SLEGFEGHNT SNNNSNIPIF  240
DNNMSSYYED MLQTKNPFPA LVSASPGTSC NTNTNQMENS MSGDPAADCF STHSPTTIFE  300
AWEKLMDDET SESYWKNILE SIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-87MYB family protein