PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002446.1_g140.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 719aa    MW: 79093.3 Da    PI: 7.8391
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002446.1_g140.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23112213199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +g
  Pav_sc0002446.1_g140.1.mk 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAG 193
                                89****************************996555555..8****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   + +++ l+v+++r+
  Pav_sc0002446.1_g140.1.mk 194 DSIVFL--RAENGDLCVGIRRA 213
                                ******..4488999****997 PP
2Auxin_resp117.89e-39286369183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a+++++FevvY+Prast+eF+vk++ v++a++v+++ GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Pav_sc0002446.1_g140.1.mk 286 AATLAANGQAFEVVYYPRASTPEFCVKASAVRAAMRVQWCSGMRFKMAFETEDSSRISWfMGTIASVQVSDPIRWPNSPWRLLQ 369
                                68899*****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    
MRDSERSLDP QLWHACAGGM VHMPPVNSKV FYFPQGHAEH AQAHVDFSSA SLRIPSLILC  60
RVASIKFMAD PETDEVFAKI KLNPIENNEP YASDEGSMEA DGSENQEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVIAKDVHGE IWKFRHIYRG TPRRHLLTTG  180
WSTFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGLDGA GGPELASGWN NSHGGGSGAC  240
VLPYGGFSVF LREEENKMVR NGGGNLSPNG NLRGKGRVRP ESVVEAATLA ANGQAFEVVY  300
YPRASTPEFC VKASAVRAAM RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVSDPIRW  360
PNSPWRLLQV TWDEPDLLQN VKCVNPWLIE LVSNFPMIHM SPFSPPRKKL RLPQPDFTLD  420
GQLTLPSFSG NPLGPSSPLC CLPDNTTAGI QGARHAQFRI SLSDLHVNNK LQSGLFQSSF  480
QRCDQNSRIS NGIRAGHTSS NENLSCLLTM GNSSQNSEKS DNVKKHQFLL FGQPILTEQQ  540
ISRSCSSDAV SQLLTGKDSK DGNQDRTKFL SDGSKSALEP QVSLEKSSNA GFPWNKDFQG  600
SDFELDTGHC KVFMESEDVG RTLDLSVLGS YEELYRRLAN MFGIEKPGLL SHVLYRDVTG  660
AVKQTGVEPF SDFMKKAKRL TILTHPIGES IGRTWIRGMQ NAENGLSATN KTGPLSIFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein