PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002456.1_g010.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GATA

Protein Properties

Length: 548aa MW: 59850 Da PI: 5.1471

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002456.1_g010.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	48.3	1.3e-15	207	243	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g+ Pav_sc0002456.1_g010.1.mk 207 CKHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 243 ***99999*********************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MYGHSEPMTM PNPIPAGGDD DAAGPGVDSI DNAHIHYEPH TLEDGGGVVA VVDDVSSDPV 60 YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGVELA 120 SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS 180 AKKSDGDFSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN 240 RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNGGGE AGDLVWREYW 300 MAAVNPQPLQ ARPFEEHGRG PIPIEDDEAE YEDGGDDGME DMEEVHVNSV SVAERGGGGG 360 GGGVVQAVLL LLGGRDVPTG VPTVEVSYDQ NTRGVADTPK RSNLSRRIAS LVRFREKRKE 420 RCFDKKIRYT VRKEVAQSLR RCQHCGVSEN NTPAMRRGPA GPRTLWNTER SQQGRKEPYH 480 GPYRTCPSKT VIERSNDASV NLDEQDLHET AEDLTNSLPM GIVSSANDEQ EPLVELTNPS 540 DTDLDIPT

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MYGHSEPMTM PNPIPAGGDD DAAGPGVDSI DNAHIHYEPH TLEDGGGVVA VVDDVSSDPV  60
YDVGSSEMRA QPYDGSSQLT LSFRGQVFVF DAVTPEKVQA VLLLLGGSEL SSGPQGVELA  120
SQNQRGTEDF PIRCSQPHRA ASLSRFRQKR KERCFDKKVR YSVRQEVALR MQRNKGQFSS  180
AKKSDGDFSW GNGQESGQDD SHAETSCKHC GISSKSTPMM RRGPSGPRSL CNACGLFWAN  240
RGTLRELSKR TQDHSVTPAE QGEADTKDLN SVTAIDAHNS LVPFSNGGGE AGDLVWREYW  300
MAAVNPQPLQ ARPFEEHGRG PIPIEDDEAE YEDGGDDGME DMEEVHVNSV SVAERGGGGG  360
GGGVVQAVLL LLGGRDVPTG VPTVEVSYDQ NTRGVADTPK RSNLSRRIAS LVRFREKRKE  420
RCFDKKIRYT VRKEVAQSLR RCQHCGVSEN NTPAMRRGPA GPRTLWNTER SQQGRKEPYH  480
GPYRTCPSKT VIERSNDASV NLDEQDLHET AEDLTNSLPM GIVSSANDEQ EPLVELTNPS  540
DTDLDIPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	397	402	DTPKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	9e-79	GATA family protein