PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002475.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 221aa    MW: 24046 Da    PI: 7.0919
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002475.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.5e-292103197
                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA  r+ +Pv+Ga+g+
  Pav_sc0002475.1_g180.1.mk   2 SCNGCRVLRKGCSDNCMLRQCLqwiedPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLIFEAVGRTINPVNGATGL 85 
                                6*********************************************************************************** PP

                     DUF260  80 ilklqqqleqlkaelall 97 
                                +l+++++++q+++e++l+
  Pav_sc0002475.1_g180.1.mk  86 LLSGKWEVCQAAVETVLR 103
                                ************999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MSCNGCRVLR KGCSDNCMLR QCLQWIEDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR  60
PALFQSLIFE AVGRTINPVN GATGLLLSGK WEVCQAAVET VLRGGTLEPL PEYTRDDHQN  120
CVHDHHVRLQ RQSTKKKRSS DLAFDDTDDH DVANCQLPDL DLCLTAAGGL TSRTKRGDCR  180
AGTPSSAEES ETTTLGSSSS SADHCSGNNL KGTTKLLRLF I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-64LBD family protein