PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0002475.1_g210.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 241aa MW: 25781.6 Da PI: 8.3884

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0002475.1_g210.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	85	107	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k Fs+ L H +H Pav_sc0002475.1_g210.1.mk 85 YKCSVCNKAFSSYQALGGHKASH 107 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MALEALKSPS TPSPPFSSFD EVEDRHLNQS QEPWAKRKRS KRPRVDDPPT EEEYLALCLI 60 MLARGTTADA AAELPPQPPA LKLSYKCSVC NKAFSSYQAL GGHKASHRKS DSSAAAAAVN 120 STDNPSNPAA TTSGRTHECS ICHKTFPTGQ ALGGHKRCHY DGGSGATSAL TTSEGGGAGA 180 SSHSHSQSQS HQSQRGFDLN LPALPEFWPG FGGDKRSQLS VEQEVQSPML GKKPRWLLSR 240 D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	5e-38	C2H2 family protein