PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002607.1_g160.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 131aa    MW: 15381 Da    PI: 9.994
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002607.1_g160.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.7e-1221107994
                                HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                         B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr 87 
                                +   + ++ l  k a  h  ++++++++ + ++d +gr W+++++ +++s++   yvl+ G k++   n+ ++gD+v+F++++ 
  Pav_sc0002607.1_g160.1.mk  21 SLRLKFCVLLTMKQA--HfpKISETQGFPIAIQDYTGRDWKFQYRCWQNSNSkkmYVLE-GLKDYMILNQWQVGDTVTFHRTE- 100
                                333334445555555..25788999*******************885555555548888.********************654. PP

                                SEE..EE CS
                         B3  88 sefelvv 94 
                                +e++l +
  Pav_sc0002607.1_g160.1.mk 101 QEGKLII 107
                                6666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
IFFPSDYIFL THLNKQETSL SLRLKFCVLL TMKQAHFPKI SETQGFPIAI QDYTGRDWKF  60
QYRCWQNSNS KKMYVLEGLK DYMILNQWQV GDTVTFHRTE QEGKLIIGTK KMPASIASIQ  120
ALKEKIWKLL G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-24B3 family protein