PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002842.1_g130.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 67aa    MW: 7439.75 Da    PI: 9.2917
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002842.1_g130.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.28.3e-081233223
                               EETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                               +C+ Cg +F+ + +Lk+H+++H
  Pav_sc0002842.1_g130.1.mk 12 TCQECGATFKKPAYLKQHMQSH 33
                               6*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    
MGMGKERKKS NTCQECGATF KKPAYLKQHM QSHSLEETSG SLYSLIFLPI SLIASLQLIV  60
SITFLFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-13C2H2 family protein