PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0002842.1_g140.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 141aa    MW: 16199.5 Da    PI: 10.1665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0002842.1_g140.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84.1e-055277123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                               +kC   +C++ F ++ n++rH +  H
  Pav_sc0002842.1_g140.1.br 52 FKCLieNCNRGFVSQGNMRRHVKElH 77
                               899999****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    
MREVSDFNGP VSGGRPPVKL HQVNLNHVML SLSFRRKDHL NRHLLQHQGK FFKCLIENCN  60
RGFVSQGNMR RHVKELHNED DPSANVGGQK QHARIVERCS NLLQSCGSMR ILMGDFEEGD  120
EQFPRPRGGP KRKYPTIEML V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.28e-16C2H2 family protein